2ML9
Solution structure of YSCUCN in a micellar complex with SDS
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 | |
2 | 3D 1H-15N NOESY | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 | |
3 | 3D 1H-15N TOCSY | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 | |
4 | 3D HNCA | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 | |
5 | 3D HN(CO)CA | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 | |
6 | 3D HNHA | 100 uM [U-99% 13C; U-99% 15N] protein-1, 30 mM sodium phosphate-2, 50 mM sodium chloride-3, 26 mM SDS-4 | 92% H2O/8% D2O | 0.12 | 6.0 | ambient | 310 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing, torsion angle dynamics | SIMULATED ANNEALING FROM EXTENDED STRUCTURE, MINIMIZATION IN TORSION ANGLE/CARTESIAN SPACE | TopSpin |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with least restraint violations, followed by selection by lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | chemical shift assignment | ANSIG | Kraulis | |
4 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
5 | refinement | ProcheckNMR | Laskowski and MacArthur | |
6 | refinement | X-PLOR NIH |