2MKP

N domain of cardiac troponin C bound to the switch fragment of fast skeletal troponin I at pH 6


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
22D 1H-13C HSQC0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
33D CBCA(CO)NH0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
43D C(CO)NH0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
53D HNCACB0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
63D H(CCO)NH0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
73D 1H-15N NOESY0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
83D 1H-13C NOESY aliphatic0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
92D 1H-1H NOESY0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
102D 1H-1H TOCSY0.2-0.3 mM [U-95% 13C; U-95% 15N] cNTnC, 2-2.5 mM sTnI(115-131), 0.25 mM DSS, 100 mM potassium chloride, 10 mM imidazole, 10 mM Calcium95% H2O/5% D2O0.126.00ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUNITY600
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
simulated annealingsemi-rigid simulated annealing. sTnI was docked onto cNTnC. cNTnC backbone was kept rigid and side chain's were allowed to rotate.VnmrJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number50
Conformers Submitted Total Number10
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJVarian
2refinementPSVSBhattacharya and Montelione
3data analysisPSVSBhattacharya and Montelione
4data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7chemical shift assignmentNMRViewJohnson, One Moon Scientific
8peak pickingNMRViewJohnson, One Moon Scientific
9data analysisNMRViewJohnson, One Moon Scientific
10geometry optimizationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
11refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore