2MGY

Solution structure of the mitochondrial translocator protein (TSPO) in complex with its high-affinity ligand PK11195

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
2	2D 1H-13C HSQC aliphatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
3	2D 1H-13C HSQC aromatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
4	3D CBCA(CO)NH	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
5	3D HNCO	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
6	3D HNCA	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
7	3D HNCACB	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
8	3D HN(CO)CA	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
9	3D HCCH-TOCSY	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
10	3D 1H-15N NOESY	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
11	3D 1H-13C NOESY aliphatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
12	3D 1H-13C NOESY aromatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
13	3D 1H-13C NOESY	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
14	3D CBCA(CO)NH	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
15	3D HNCO	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
16	3D HNCA	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
17	3D HNCACB	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
18	3D HN(CO)CA	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
19	3D CBCA(CO)NH	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
20	3D HNCO	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
21	3D HNCA	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
22	3D HNCACB	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
23	3D HN(CO)CA	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
24	2D 1H-13C HSQC aliphatic	0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
25	3D 1H-13C NOESY aliphatic	0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
26	3D CBCA(CO)NH	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
27	3D HNCO	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
28	3D HNCA	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
29	3D HNCACB	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
30	3D HN(CO)CA	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
31	3D CBCA(CO)NH	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
32	3D HNCO	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
33	3D HNCA	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
34	3D HNCACB	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
35	3D HN(CO)CA	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
36	3D 1H-13C NOESY aliphatic	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
37	3D 1H-13C NOESY aromatic	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
38	2D 1H-13C HSQC aliphatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
39	2D 1H-13C HSQC aromatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
40	3D 1H-13C NOESY aliphatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
41	3D 1H-13C NOESY aromatic	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
42	3D HCCH-TOCSY	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
43	2D 1H-15N HSQC	0.8 mM [U-13C; U-15N; U-2H] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
44	2D 1H-15N HSQC	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
45	2D 1H-15N HSQC	0.5 mM [U-2H,15N; Idelta1/Leu,ValproS-13CH3] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
46	2D 1H-15N HSQC	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
47	2D 1H-15N HSQC	0.5 mM [U-2H; U-1H,15N-Leu,Phe] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	93% H2O/7% D2O	10	6.0	ambient	315
48	2D 1H-15N HSQC	0.9 mM [U-100% 13C; U-100% 15N] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-2H] DPC micelles	100% D2O	10	6.0	ambient	315
49	3D 1H-15N NOESY	0.5 mM [U-2H; U-1H, 15N,13C-TRP, ARG] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
50	2D 1H-13C HSQC aliphatic	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315
51	2D 1H-13C HSQC aromatic	0.5 mM [U-2H; U-1H, 15N,13C-Ile,Lys,Pro,Gly] protein, 2.9 mM PKA, 10 mM sodium phosphate buffer, 60 mM [U-100% 2H] DPC micelles	90% H2O/10% D2O	10	6.0	ambient	315

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800
2	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
simulated annealing		CYANA

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	105
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	peak picking	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
2	chemical shift assignment	Sparky		Goddard
3	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
4	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
5	processing	NMRDraw		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6	chemical shift assignment	CARA		Keller and Wuthrich

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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2MGY

Solution structure of the mitochondrial translocator protein (TSPO) in complex with its high-affinity ligand PK11195