2MAP

Solution structure of the complex formed by the region 2 of E. coli sigmaE and its cognate -10 promoter element non template strand TGTCAAA.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
22D 1H-13C HSQC0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
32D 1H-13C HSQC aromatic0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
43D HNCACB0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
53D CBCA(CO)NH0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
63D HNCO0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
73D HNCA0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
83D HN(CO)CA0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
93D HCCH-TOCSY0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
103D 1H-15N NOESY0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
113D 1H-13C NOESY aliphatic0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
123D 1H-13C NOESY aromatic0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_290% H2O/10% D2O0.076.5ambient303
132D NOESY 1H-1H F1F2F0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_2100% D2O0.076.5ambient303
142D NOESY 1H-1H F2F0.8 mM [U-100% 13C; U-100% 15N] protein_1, 0.8 mM protein_2100% D2O0.076.5ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE700
3BrukerAVANCE900
NMR Refinement
MethodDetailsSoftware
simulated annealingTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number30
Conformers Submitted Total Number18
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.0Bruker Biospin
2structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
3refinementAmberCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo and Kollman
4chemical shift assignmentCARAKeller and Wuthrich
5data analysisCARAKeller and Wuthrich