2M4G

Solution structure of the Core Domain (11-85) of the Murine Norovirus VPg protein

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
2	3D HCCH-TOCSY	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
3	2D 1H-13C HSQC aliphatic	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
4	3D HCCH-TOCSY	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
5	2D 1H-13C HSQC aromatic	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
6	3D HNCACB	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
7	3D CBCA(CO)NH	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
8	3D HNCO	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
9	3D HN(CA)CO	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
10	3D H(CC)(CO)NH	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
11	3D (H)C(CCO)NH	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
12	3D (HB)CB(CGCD)HD	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
13	3D (HB)CB(CGCDCE)HE	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
14	3D HBHA(CBCACO)NH	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303
15	3D 1H-13C NOESY	710 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 360 mM sodium chloride, 0.001 w/v sodium azide, 1 mM DTT, 60 mM sodium phosphate	100% D2O	360	6.5	Ambient	303
16	3D 1H-15N NOESY	590 uM [U-98% 13C; U-98% 15N] MNV VPg 11-85, 50 mM sodium phosphate, 300 mM Sodium chloride, 1 mM DTT	90% H2O/10% D2O	300	6.5	ambient	303

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
2	geometry optimization	TALOS		Cornilescu, Delaglio and Bax
3	structure solution	ARIA		Linge, O'Donoghue and Nilges
4	data analysis	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5	data analysis	NMRView		Johnson, One Moon Scientific
6	chemical shift assignment	NMRView		Johnson, One Moon Scientific
7	chemical shift assignment	MARS		Zweckstetter et al., 2004