2M48

Solution Structure of IBR-RING2 Tandem Domain from Parkin

SOLUTION NMR

---

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 15N] SD01679p, 90% H2O/10% D2O	90% H2O/10% D2O	0.150	7.5	ambient	298
2	2D 1H-13C HSQC aliphatic	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
3	3D 1H-15N NOESY	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 15N] SD01679p, 90% H2O/10% D2O	90% H2O/10% D2O	0.150	7.5	ambient	298
4	3D HCCH-TOCSY	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
5	3D 1H-13C NOESY aliphatic	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
6	3D 1H-13C NOESY aromatic	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
7	3D HNCA	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
8	3D HCACO	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
9	3D HNCACB	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
10	3D CBCA(CO)NH	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
11	3D HNCO	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
12	3D HNHA	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
13	3D C(CO)NH	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
14	3D 1H-13C NOESY aliphatic	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
15	2D (HB)CB(CGCD)HD	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
16	2D (HB)CB(CGCDCE)HE	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
17	3D HNHB	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
18	2D 1H-13C HSQC aromatic	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298
19	3D H(CCO)NH	25 mM TRIS, 150 mM sodium chloride, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	90% H2O/10% D2O	0.150	7.5	ambient	298
20	3D 13C TOCSY aromatic	25 mM TRIS, 150 mM sodium chloride-, 5 mM DTT, 500 uM [U-98% 13C; U-98% 15N] SD01679p	100% D2O	0.150	7.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
torsion angle dynamics	with explicit solvent and full electrostatics	VnmrJ

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VnmrJ	Varian VnmrJ 2.2D	Varian
2	processing	NMRPipe	2011.084.20.33	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	processing	NMRDraw	Ver 5.7 Rev 2011.084.20.33	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	data analysis	NMRView	8.2.33 with Java 1.6.0_31	Johnson, One Moon Scientific
5	chemical shift assignment	NMRView	8.2.33 with Java 1.6.0_31	Johnson, One Moon Scientific
6	peak picking	NMRView	8.2.33 with Java 1.6.0_31	Johnson, One Moon Scientific
7	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
8	refinement	X-PLOR NIH	2.33	Schwieters, Kuszewski, Tjandra and Clore
9	geometry optimization	TALOS	TALOSPlus	Cornilescu, Delaglio and Bax
10	data analysis	Procheck	3.5.4	Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho