2M0S
Solution Structure of the trans-membrane domain of the NS2A of dengue virus
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 3 mg/mL protein, 44.4% [U-2H] chloroform, 44.4% [U-2H] methanol, 11.2% H2O | 44.4% CDCl3/44.4CD3OH/11.2% H2O | ambient | 298 | |||
2 | 2D 1H-1H TOCSY | 3 mg/mL protein, 44.4% [U-2H] chloroform, 44.4% [U-2H] methanol, 11.2% H2O | 44.4% CDCl3/44.4CD3OH/11.2% H2O | ambient | 298 | |||
3 | 2D 1H-1H NOESY | 3 mg/mL protein, 44.4% [U-2H] chloroform, 44.4% [U-2H] methanol, 11.2% H2O | 44.4% CDCl3/44.4CD3OH/11.2% H2O | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | processing | TopSpin | 2.1 | Bruker Biospin |
3 | chemical shift assignment | Sparky | Goddard | |
4 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
5 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |