2LZZ

Solution structure of a mutant of the triheme cytochrome PpcA from Geobacter sulfurreducens sheds light on the role of the conserved aromatic residue F15


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4 mM [U-100% 15N] F15L polypeptide, 3 mM PROTOPORPHYRIN IX CONTAINING FE, 45 mM sodium phosphate, 0.04 % sodium azide93% H2O/7% D2O457.1ambient298
22D 1H-1H TOCSY1 mM F15L polypeptide, 3 mM PROTOPORPHYRIN IX CONTAINING FE, 45 mM sodium phosphate, 0.04 % sodium azide93% H2O/7% D2O1007.1ambient298
32D 1H-1H COSY1 mM F15L polypeptide, 3 mM PROTOPORPHYRIN IX CONTAINING FE, 45 mM sodium phosphate, 0.04 % sodium azide93% H2O/7% D2O1007.1ambient298
42D 1H-1H NOESY1 mM F15L polypeptide, 3 mM PROTOPORPHYRIN IX CONTAINING FE, 45 mM sodium phosphate, 0.04 % sodium azide93% H2O/7% D2O1007.1ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
NMR Refinement
MethodDetailsSoftware
simulated annealingTOPSPIN
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTOPSPINBruker Biospin
2collectionTOPSPINBruker Biospin
3chemical shift assignmentSPARKYGoddard
4chemical shift calculationPARADYANATurner, D. L. Brennan, L. Chamberlin, S. G. Louro, R. O. Xavier, A. V.
5refinementPARADYANATurner, D. L. Brennan, L. Chamberlin, S. G. Louro, R. O. Xavier, A. V.
6superimpositionMolmolKoradi, Billeter and Wuthrich
7visual inspectionMolmolKoradi, Billeter and Wuthrich
8validationCINGNabuurs, Spronk, Krieger, Maassen, Vriend and Vuister