2LZ1

Solution NMR Structure of the DNA-Binding Domain of Human NF-E2-Related Factor 2, Northeast Structural Genomics Consortium (NESG) Target HR3520O

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
2	2D 1H-13C HSQC aliphatic	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
3	3D HNCO	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
4	3D CBCA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
5	3D HNCACB	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
6	2D 1H-13C HSQC aromatic	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
7	3D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
8	3D HBHA(CO)NH	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
9	3D HN(CA)CO	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
10	3D (H)CCH-TOCSY aliphatic	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
11	3D (H)CCH-COSY aliphatic	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
12	2D 1H-13C HSQC methyl	0.5 mM [5% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
13	1D 15N T1	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298
14	1D 15N T2	0.5 mM [U-100% 13C; U-100% 15N] HR3520O, 50 uM DSS, 0.02 % sodium azide, 50 mM Arginine, 10 mM DTT, 50 mM ammonium acetate	90% H2O/10% D2O		6.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Varian	INOVA	750

NMR Refinement
Method	Details	Software
simulated annealing	STRUCTURE DETERMINATION WAS PERFORMED BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD	CNS

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	100
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
3	geometry optimization	CNS	1.2	Brunger, Adams, Clore, Gros, Nilges and Read
4	refinement	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
5	geometry optimization	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
6	structure solution	CYANA	3.0	Guntert, Mumenthaler and Wuthrich
7	refinement	AS-DP	1.0	Huang, Tejero, Powers and Montelione
8	data analysis	AutoAssign	2.3.0	Zimmerman, Moseley, Kulikowski and Montelione
9	chemical shift assignment	AutoAssign	2.3.0	Zimmerman, Moseley, Kulikowski and Montelione
10	collection	VnmrJ	2.2D	Varian
11	data analysis	CARA	1.8.4	Keller and Wuthrich
12	chemical shift assignment	CARA	1.8.4	Keller and Wuthrich
13	peak picking	CARA	1.8.4	Keller and Wuthrich
14	geometry optimization	TALOS+		Shen, Cornilescu, Delaglio and Bax
15	structure validation	PSVS	1.4	Bhattacharya, Montelione

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.