2LX7

Solution NMR structure of SH3 domain of growth arrest-specific protein 7 (GAS7) (fragment 1-60) from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR8574A


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
22D 1H-13C HSQC0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
33D HNCO0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
43D CBCA(CO)NH0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
53D HNCACB0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
63D 1H-15N NOESY0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
73D 1H-13C NOESY aliphatic0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
83D 1H-13C NOESY aromatic0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
94D CC-NOESY0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 50 uM DSS100% D2O6.5ambient298
103D HNCA0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
113D HN(CO)CA0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
123D H(CCO)NH0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
133D C(CO)NH0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
143D HBHA(CO)NH0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
153D HCCH-TOCSY0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
163D HCCH-COSY0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
173D HNHA0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
183D HCCH-TOCSY0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 50 uM DSS100% D2O6.5ambient298
192D 1H-13C HSQC-arom0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
202D 1H-15N HSQC-Histidine0.26 mM [U-100% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
212D 1H-13C HSQC - NC50.45 mM [U-10% 13C; U-100% 15N] SH3 domain of GAS7, 0.02 % NaN3, 10 mM DTT, 5 mM CaCL2, 100 mM NaCL, 1 x Proteinase Inhibitors, 20 mM MES pH 6.5, 10 % D2O, 50 uM DSS90% H2O/10% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE850
2VarianINOVA600
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinemen,structure solution,geometry optimizationCNSBrunger, Adams, Clore, Gros, Nilges and Read
2refinement,geometry optimization,structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
3data analysis,refinementAutoStructure2.1Huang, Tejero, Powers and Montelione
4data analysis,chemical shift assignmentAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6collectionTopSpinBruker Biospin
7collectionVnmrJVarian
8chemical shift assignmentPINEBahrami, Markley, Assadi, and Eghbalnia
9data analysisSparkyGoddard
10geometry optimizationTALOS+Shen, Cornilescu, Delaglio and Bax
11structure validationPSVSBhattacharya, Montelione
12refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read