2LVB

Solution NMR Structure DE NOVO DESIGNED PFK fold PROTEIN, Northeast Structural Genomics Consortium (NESG) Target OR250


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
22D 1H-13C HSQC0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
33D HNCO0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
43D CBCA(CO)NH0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
53D HNCACB0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
63D 1H-13C arom NOESY0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
73D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
83D HCCH-TOCSY0.784 mM [U-100% 13C; U-100% 15N] OR250.001, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
92D 1H-13C HSQC0.854 mM [U-100% 13C; U-100% 15N] OR250.003, 100 mM NaCl, 5 mM DTT, 0.02 % NaN3, 10 mM Tris-HCl pH 7.590% H2O/10% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
distance geometry, simulated annealing, torsion angle dynamics, molecular dynamicsCNS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
2structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
3geometry optimizationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
5geometry optimizationCYANA3.0Guntert, Mumenthaler and Wuthrich
6structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
7data analysisAutoStructure2.1Huang, Tejero, Powers and Montelione
8refinementAutoStructure2.1Huang, Tejero, Powers and Montelione
9data analysisAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
10chemical shift assignmentAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
11processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
12data analysisXEASYBartels et al.
13peak pickingXEASYBartels et al.
14chemical shift assignmentXEASYBartels et al.
15collectionTopSpinBruker Biospin
16collectionVnmrJVarian
17data analysisSparkyGoddard
18geometry optimizationTALOS+Shen, Cornilescu, Delaglio and Bax
19structure validationPSVSBhattacharya, Montelione