2LS9
Pleurocidin-NH2
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 5 mM TRIS, 1 mM pleurocidin, 100 mM [U-2H] SDS, 0.05 % TSP | 90% H2O/10% D2O | 5 | 7.0 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 5 mM TRIS, 1 mM pleurocidin, 100 mM [U-2H] SDS, 0.05 % TSP | 90% H2O/10% D2O | 5 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | TopSpin | Bruker Biospin | |
3 | structure solution | ARIA | Linge, O'Donoghue and Nilges | |
4 | refinement | ARIA | Linge, O'Donoghue and Nilges | |
5 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
6 | data analysis | AQUA | Rullmann, Doreleijers and Kaptein | |
7 | chemical shift assignment | Sparky | Goddard | |
8 | peak picking | Sparky | Goddard |