2LRS

The second dsRBD domain from A. thaliana DICER-LIKE 1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF90% H2O/10% D2O0.057ambient298
22D 1H-13C HSQC800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF90% H2O/10% D2O0.057ambient298
33D HNCO600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
43D HNCA600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
53D HNCACB600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
63D HN(CO)CA600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
73D HN(COCA)CB600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
83D HN(CA)CO600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
93D HN(CA)HA600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
103D H(CCO)NH600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
113D HCCH-TOCSY600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
123D 1H-15N NOESY800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF90% H2O/10% D2O0.057ambient298
133D 1H-13C NOESY800 mM [U-100% 13C; U-100% 15N] protein, 50 mM HEPES, 0.05 % sodium azide, 1 mM PMSF90% H2O/10% D2O0.057ambient298
142D 1H-1H NOESY800 mM protein, 50 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF100% D2O0.757ambient298
152D 1H-1H TOCSY800 mM protein, 50 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF100% D2O0.757ambient298
162D 15N-IPAP-HSQC600 uM [U-100% 13C; U-100% 15N] protein, 50 mM sodium phosphate, 5 % C12/E5-Hexanol, 10 mM DTT, 1 mM PMSF, 0.05 % sodium azide, 50 mM sodium chloride90% H2O/10% D2O0.757ambient298
173D HNHA600 mM [U-100% 13C; U-100% 15N] protein, 100 mM sodium phosphate, 50 mM sodium chloride, 0.05 % sodium azide, 1 mM PMSF, 10 mM DTT90% H2O/10% D2O0.757ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAvance600
2VarianVXRS800
NMR Refinement
MethodDetailsSoftware
molecular dynamicsCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number1000
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNSBrunger, Adams, Clore, Gros, Nilges, and Read
2refinementCNSBrunger, Adams, Clore, Gros, Nilges, and Read
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4chemical shift assignmentNMRViewJohnson, One Moon Scientific