2LPW
human CEB25 minisatellite G-quadruplex
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
2 | 2D 1H-1H TOCSY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
3 | 2D 1H-13C HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
4 | 2D 1H-1H COSY | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
5 | 2D 1H-13C HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
6 | 2D 1H-31P-HSQC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 | |
7 | 2D 1H-13C-HMBC | 0.2-2 mM DNA (26-MER) | 90% H2O/10% D2O | 90 | 7.00 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 400 |
2 | Bruker | AMX | 600 |
3 | Bruker | AMX | 700 |
4 | Bruker | AMX | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, molecular dynamics | DGSA-distance geometry simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR NIH | 2.30 | Schwieters, Kuszewski, Tjandra and Clore |
2 | data analysis | X-PLOR NIH | 2.30 | Schwieters, Kuszewski, Tjandra and Clore |
3 | structure solution | Sparky | Goddard | |
4 | data analysis | Sparky | Goddard | |
5 | structure solution | Felix | Accelrys Software Inc. | |
6 | data analysis | Felix | Accelrys Software Inc. | |
7 | refinement | Felix | Schwieters, Kuszewski, Tjandra and Clore |