2LP2

Solution structure and dynamics of human S100A1 protein modified at cysteine 85 with homocysteine disulfide bond formation in calcium saturated form


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
22D 1H-15N HSQC NH2 only1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
32D 1H-13C HSQC aliphatic1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride100% D2O7.2ambient310
42D 1H-13C HSQC aromatic1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride100% D2O7.2ambient310
53D CBCA(CO)NH1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
63D C(CO)NH1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
73D HNCO1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
83D HNCA1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
93D HNCACB1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
103D HBHA(CO)NH1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
113D HCCH-TOCSY1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride100% D2O7.2ambient310
123D 1H-13C NOESY aliphatic1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride100% D2O7.2ambient310
133D 1H-13C NOESY aromatic1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride100% D2O7.2ambient310
143D 1H-15N NOESY1 mM [U-98% 13C; U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
152D 1H-15N HSQC (T1)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
162D 1H-15N HSQC (T1)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
172D 1H-15N HSQC (T1)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
182D 1H-15N HSQC (T2)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
192D 1H-15N HSQC (T2)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
202D 1H-15N HSQC (T2)1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
212D 15N-{1H} NOE1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
222D 15N-{1H} NOE1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
232D 15N-{1H} NOE1 mM [U-98% 15N] S100A1 monomer, 10 mM Calcium ion, 50 mM TRIS-d11, 0.1 mM sodium azide, 50 mM sodium chloride90% H2O/10% D2O7.2ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA400
2VarianUNITYPLUS500
3VarianUniform NMR System700
NMR Refinement
MethodDetailsSoftware
simulated annealingstandard sa.inp xplor NIH protocolCARA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number198
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCARAKeller and Wuthrich
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentSparkyGoddard
4peak pickingSparkyGoddard
5structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
6refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
7structure solutionCYANAGuntert, Mumenthaler and Wuthrich