2LK0
Solution structure and binding studies of the RanBP2-type zinc finger of RBM5
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H TOCSY | 100 uM RBM5-ZF1, 150 uM ZINC ION | 90% H2O/10% D2O | 0 | 5.7 | ambient | 293 | |
| 2 | 2D DQF-COSY | 100 uM RBM5-ZF1, 150 uM ZINC ION | 90% H2O/10% D2O | 0 | 5.7 | ambient | 293 | |
| 3 | 2D 1H-1H NOESY | 100 uM RBM5-ZF1, 150 uM ZINC ION | 90% H2O/10% D2O | 0 | 5.7 | ambient | 293 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 700 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing, Energy minimization | TopSpin | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | collection | TopSpin | v2.1 | Bruker Biospin |
| 2 | data analysis | TopSpin | v2.1 | Bruker Biospin |
| 3 | chemical shift assignment | CARA | v1.5,v1.8 | Keller and Wuthrich |
| 4 | peak picking | CARA | v1.5,v1.8 | Keller and Wuthrich |
| 5 | structure solution | CYANA | v2.1 | Guntert, Mumenthaler and Wuthrich |
| 6 | refinement | CYANA | v2.1 | Guntert, Mumenthaler and Wuthrich |
| 7 | energy minimization | SYBYL | Tripos | |
| 8 | refinement | SYBYL | Tripos | |
