Experiment: 2LGV

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
2	2D 1H-13C HSQC aliphatic	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	100% D2O	0.120	7.5	ambient	298
3	2D 1H-13C HSQC aromatic	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	100% D2O	0.120	7.5	ambient	298
4	3D 1H-15N NOESY	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
5	3D HCCH-TOCSY	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	100% D2O	0.120	7.5	ambient	298
6	3D 1H-13C NOESY aliphatic	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	100% D2O	0.120	7.5	ambient	298
7	3D 1H-13C NOESY aromatic	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	100% D2O	0.120	7.5	ambient	298
8	3D HNCA	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
9	3D HN(CO)CA	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
10	3D HNCACB	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
11	3D CBCA(CO)NH	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
12	3D HNCO	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
13	3D HNHA	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298
14	3D C(CO)NH	20 mM sodium phosphate, 100 mM sodium chloride, 1 mM DTT, 700 uM [U-98% 13C; U-98% 15N] protein	90% H2O/10% D2O	0.120	7.5	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing, torsion angle dynamics	Based on modified RECOORD scripts	VnmrJ

NMR Ensemble Information
Conformer Selection Criteria	target function
Conformers Calculated Total Number	20
Conformers Submitted Total Number	20
Representative Model	1 (closest to the average)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	VnmrJ	Varian VnmrJ 2.2D	Varian
2	processing	NMRPipe	2009.015.15.35	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	processing	NMRDraw	Ver 5.0 Rev 2009.244.15.09	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4	data analysis	NMRView	8.0.rc47 with Java 1.6.0_26	Johnson, One Moon Scientific
5	chemical shift assignment	NMRView	8.0.rc47 with Java 1.6.0_26	Johnson, One Moon Scientific
6	peak picking	NMRView	8.0.rc47 with Java 1.6.0_26	Johnson, One Moon Scientific
7	structure solution	CYANA	2.1	Guntert, Mumenthaler and Wuthrich
8	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
9	geometry optimization	TALOS	TALOSPlus	Cornilescu, Delaglio and Bax
10	refinement	Procheck		Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Tho

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.