2LC4
Solution Structure of PilP from Pseudomonas aeruginosa
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
2 | 3D HNCACB | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
4 | 3D HCC-TOCSY | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
5 | 3D CCC-TOCSY | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
6 | 2D 1H-13C HSQC aliphatic | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 | |
8 | 3D 1H-13C NOESY | 150 mM sodium chloride, 20 mM TRIS | 90% H2O/10% D2O | 0.15 | 7.5 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | geometry optimization | TALOS | Cornilescu, Delaglio and Bax | |
6 | data analysis | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
7 | refinement | CYANA |