Experiment: 2LA5

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	JR	1 mM RNA (36-MER), 1 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
2	2D 1H-1H NOESY	1 mM RNA (36-MER), 1 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
3	2D 1H-1H COSY	1 mM RNA (36-MER), 1 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
4	2D 1H-1H TOCSY	1 mM RNA (36-MER), 1 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
5	2D 1H-13C HSQC	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
6	2D 1H-15N HSQC	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
7	2D 13C-1H CTHSQC	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
8	HNH-COSY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
9	HNN-COSY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
10	HCCH-COSY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
11	HCCH-TOCSY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
12	13C-edited NOESY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
13	15N-edited NOESY	0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
14	15N-1H HSQC	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
15	13C-1H HSQC	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
16	HNCA	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
17	HNCO	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
18	HNCOCA	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
19	HNCACB	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
20	HBHACONH	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
21	HCCH-TOCSY	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
22	HCCH-COSY	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
23	13C-edited NOESY	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
24	15N-edited NOESY	0.5 mM RNA (36-MER), 0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
25	HNN-COSY	0.2-0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.2-0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
26	13C-edited NOESY	0.2-0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.2-0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
27	15N-edited NOESY	0.2-0.5 mM [U-100% 13C; U-100% 15N] RNA (36-MER), 0.2-0.5 mM [U-100% 13C; U-100% 15N] Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
28	CTHSQC	0.5 mM [U-13C; U-15N]-Gua RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
29	HCCH-COSY	0.5 mM [U-13C; U-15N]-Gua RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
30	HCCH-TOCSY	0.5 mM [U-13C; U-15N]-Gua RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
31	13C-edited NOESY	0.5 mM [U-13C; U-15N]-Gua RNA (36-MER), 0.5 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
32	CTHSQC	0.2 mM [U-13C; U-15N]-Ade RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
33	HCCH-COSY	0.2 mM [U-13C; U-15N]-Ade RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
34	HCCH-TOCSY	0.2 mM [U-13C; U-15N]-Ade RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
35	13C-edited NOESY	0.2 mM [U-13C; U-15N]-Ade RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
36	CTHSQC	0.2 mM [U-13C; U-15N]-Cyt RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
37	HCCH-COSY	0.2 mM [U-13C; U-15N]-Cyt RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
38	HCCH-TOCSY	0.2 mM [U-13C; U-15N]-Cyt RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
39	13C-edited NOESY	0.2 mM [U-13C; U-15N]-Cyt RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
40	CTHSQC	0.2 mM [U-13C; U-15N]-Ura RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
41	HCCH-COSY	0.2 mM [U-13C; U-15N]-Ura RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
42	HCCH-TOCSY	0.2 mM [U-13C; U-15N]-Ura RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
43	13C-edited NOESY	0.2 mM [U-13C; U-15N]-Ura RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
44	1D 15N-filtered	0.2 mM rG-to-dG and rU-to-dU 2% 15N-labelled RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298
45	2D NOESY	0.2 mM rG-to-dG and rU-to-dU 2% 15N-labelled RNA (36-MER), 0.2 mM Peptide	90% H2O/10% D2O and 100%D2O	0.050	6.8	ambient	298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	UNITY	600
2	Bruker	AVANCE	600
3	Bruker	AVANCE	700
4	Bruker	AVANCE	800

NMR Refinement
Method	Details	Software
torsion angle dynamics, molecular dynamics		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	structure solution	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	geometry optimization	Amber		Accelrys Software Inc.
3	processing	Felix		Accelrys Software Inc.
4	collection	VNMR		Varian
5	collection	TopSpin		Bruker Biospin
6	data analysis	CARA		K. Wuthrich
7	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
8	refinement	Amber		Accelrys Software Inc.

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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2LA5

RNA Duplex-Quadruplex Junction Complex with FMRP RGG peptide