2L2A

Mutated Domain 11 of the Cytoplasmic region of the Cation-independent mannose-6-phosphate receptor


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
22D 1H-13C HSQC5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
33D CBCA(CO)NH5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
43D CBCA(CO)NH5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
53D C(CO)NH5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
63D HNCO5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
73D HNCA5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
83D HNCACB5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
93D HN(CO)CA5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
103D 1H-15N NOESY5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
113D 1H-13C NOESY5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
123D HCCH-TOCSY5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
133D H(CCO)NH5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA95% H2O/5% D2O04.2ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVNMRS600
NMR Refinement
MethodDetailsSoftware
simulated annealing, simulated annealingARIA2.2 protocol. Cool_1 and cool_2 steps increased to 40K and cool_2, ARIA2.2 water refinement modified with RECOORD water refinement parametersVNMRJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMRJVarian
2chemical shift assignmentAnalysis2.13CCPN
3data analysisAnalysis2.13CCPN
4refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
5structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7geometry optimizationTALOSCornilescu, Delaglio and Bax
8refinementiCingr765Vuister, Doreleijers, Sousa da Silva
9refinementARIA2.2Linge, O'Donoghue and Nilges
10structure solutionARIA2.2Linge, O'Donoghue and Nilges