2KXH

Solution structure of the first two RRM domains of FIR in the complex with FBP Nbox peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCAmM [U-13C; U-15N] protein_1-6, 10 mM TRIS-HCl pH 8.0-7, 50 mM sodium chloride-8, 2 mM TCEP-9, mM protein_2-1090% H2O/10% D2O0.068.0ambient310
23D HCCH-TOCSY0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient310
33D HCCH-TOCSY0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient318
43D 13C rejected 1H-13C NOESYmM [U-13C; U-15N] protein_1-16, 10 mM TRIS-HCl pH 8.0-17, 50 mM sodium chloride-18, 2 mM TCEP-19, mM protein_2-20100% D2O0.068.0ambient310
53D 1H-15N NOESY0.6 mM [U-15N] protein_1-1, 10 mM TRIS-HCl pH 8.0-2, 50 mM sodium chloride-3, 2 mM TCEP-4, 1.25 mM protein_2-590% H2O/10% D2O0.068.0ambient310
63D 1H-13C NOESY without 13C decoupling during the indirectly acquired proton dimensionmM [U-13C; U-15N] protein_1-16, 10 mM TRIS-HCl pH 8.0-17, 50 mM sodium chloride-18, 2 mM TCEP-19, mM protein_2-20100% D2O0.068.0ambient310
73D 1H-13C NOESY without 13C decoupling during the indirectly acquired proton dimension0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient310
83D 1H-13C NOESY without 13C decoupling during the indirectly acquired proton dimension0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient318
93D 1H-13C NOESYmM [U-13C; U-15N] protein_1-16, 10 mM TRIS-HCl pH 8.0-17, 50 mM sodium chloride-18, 2 mM TCEP-19, mM protein_2-20100% D2O0.068.0ambient310
103D 1H-13C NOESYmM [U-13C; U-15N] protein_1-6, 10 mM TRIS-HCl pH 8.0-7, 50 mM sodium chloride-8, 2 mM TCEP-9, mM protein_2-1090% H2O/10% D2O0.068.0ambient310
113D 1H-13C NOESY0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient310
123D 1H-13C NOESY0.3 mM [U-13C; U-15N] protein_2-11, 10 mM TRIS-HCl pH 8.0-12, 50 mM sodium chloride-13, 2 mM TCEP-14, mM protein_1-15100% D2O0.068.0ambient318
133D 1H-13C NOESY optmised for aromaticsmM [U-13C; U-15N] protein_1-16, 10 mM TRIS-HCl pH 8.0-17, 50 mM sodium chloride-18, 2 mM TCEP-19, mM protein_2-20100% D2O0.068.0ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2BrukerAVANCE600
3BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
simulated annealingARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisARIA1.2Linge, O'Donoghue and Nilges
2refinementARIA1.2Linge, O'Donoghue and Nilges
3structure solutionARIA1.2Linge, O'Donoghue and Nilges
4processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5chemical shift assignmentSparkyGoddard
6data analysisSparkyGoddard
7peak pickingSparkyGoddard
8data analysisXEASYBartels et al.