2KVO

Solution NMR structure of Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), Northeast Structural Genomics Consortium Target SgR171


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
22D 1H-13C HSQC_CT0.44 mM [U-5% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
33D 1H-15N NOESY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
43D 1H-13C NOESY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
53D HNCO0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
63D HNCA0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
73D HNCACB0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
83D CBCA(CO)NH0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
93D HN(CO)CA0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
103D HBHA(CO)NH0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
113D H(CCO)NH0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
123D C(CO)NH0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
133D HCCH-TOCSY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
143D HCCH-COSY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
153D HCCH-TOCSY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.26.5ambient293
164D CC NOESY0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.26.5ambient293
172D 1H-15N HSQC_swN150ppm0.58 mM [U-100% 13C; U-100% 15N] Photosystem II reaction center Psb28 protein from Synechocystis sp.(strain PCC 6803), 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAvanceIII850
NMR Refinement
MethodDetailsSoftware
simulated annealingXplor-nih-2.20 with HBDBNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionVNMR6.1CVarian
3collectionTOPSPIN2.1.4Bruker Biospin
4data analysisAutoStructure2.2.1Huang, Tejero, Powers and Montelione
5structure solutionX-PLOR_NIH2.20Schwieters, Kuszewski, Tjandra and Clore
6refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
7data analysisSPARKY3.113Goddard
8refinementPSVS1.4Bhattacharya and Montelione
9chemical shift assignmentAutoAssign2.30Zimmerman, Moseley, Kulikowski and Montelione
10structure solutionPDBSTAT5.1(PdbStat)-Roberto Tejero and Gaetano T. Montelione
11autoassignmentPINE_Server1.0Bahrami, A., Assadi, A., Markley, J. L. & Eghbalnia, H.