2KFP

Solution NMR structure of PSPTO_3016 from Pseudomonas syringae. Northeast Structural Genomics Consortium target PsR293.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
22D 1H-13C HSQC1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
32D 1H-13C HSQC1.1 mM [U-5% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
42D 1H-15N HSQC1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
53D 1H-15N NOESY1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
63D 1H-13C NOESY1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
72D 1H-13C HSQC1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
84D CC NOESY1.0 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS100% D2O.14.5ambient293
93D HNCO1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
103D HNCA1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
113D HNCACB1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
123D CBCA(CO)NH1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
133D HBHA(CO)NH1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
143D HCCH-TOCSY1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
153D HCCH-TOCSY1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
163D CBCA(CO)NH1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
173D H(CCO)NH1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
183D HN(CO)CA1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
193D C(CO)NH1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
203D HCCH-COSY1.1 mM [U-100% 13C; U-100% 15N] protein, 20 mM ammonium acetate, 100 mM sodium chloride, 10 mM DTT, 5 mM calcium chloride, 0.02 % sodium azide, 50 uM DSS90% H2O/10% D2O.14.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealing, simulated annealingXplor-NIH, Xplor-NIH HBDA Torsion Angle RefinementNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionVNMR6.1CVarian
3collectionTopSpin2.1.3Bruker Biospin
4data analysisAutoStructure2.2.1Huang, Tejero, Powers and Montelione
5structure solutionX-PLOR NIH2.20Schwieters, Kuszewski, Tjandra and Clore
6data analysisSparky3.113Goddard
7structure solutionPSVS1.3Bhattacharya and Montelione
8chemical shift assignmentAutoAssign2.3.0Zimmerman, Moseley, Kulikowski and Montelione
9refinementPSVS1.3Bhattacharya and Montelione