2JM0
Solution structure of chicken villin headpiece subdomain containing a fluorinated side chain in the core
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
3 | 2D COSY | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
4 | 2D TOCSY | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
5 | 2D NOESY | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
6 | 2D 1H-15N HSQC | 2 mM selectively 15N-[Ala, Phe, Leu] F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
7 | 2D HNCO | 2 mM selectively 15N-[Ala, Phe, Leu] F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
8 | 2D HNCACB | 2 mM selectively 15N-[Ala, Phe, Leu] F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
9 | 2D HNHA | 2 mM selectively 15N-[Ala, Phe, Leu] F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
10 | 2D HNHB | 2 mM selectively 15N-[Ala, Phe, Leu] F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 | |
11 | 19F-HOESY | 4 mM F5-Phe-cVHP | 93% H2O/7% D2O | 10 | 5.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 750 |
4 | Varian | INOVA | 600 |
5 | Varian | INOVA | 800 |
6 | Varian | INOVA | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, molecular dynamics | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, F. et al. | |
2 | data analysis | PIPP | Garrett, D. | |
3 | data analysis | Sparky | Goddard, T. | |
4 | structure solution | CYANA | Guntert, P., Mumenthaler, C. and Wuthrich, K. | |
5 | structure solution | X-PLOR NIH | Schwieters, C.D. et al. | |
6 | refinement | X-PLOR NIH | Schwieters, C.D. et al. |