2IVJ

Isopenicillin N Synthase From Aspergillus Nidulans (Anaerobic Ac- cyclopropylglycine Fe Complex)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.51.8M LITHIUM SULPHATE, 100MM TRIS/HCL (PH8.5), (5MM FERROUS SULPHATE, 70 MM ACCPG, 50MG/ML IPNS), pH 8.50
Crystal Properties
Matthews coefficientSolvent content
2.2640

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.663α = 90
b = 71.182β = 90
c = 100.877γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCD2002-11-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4634.31000.149.73.9232914
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.461.541000.353.33.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.4658.1256739234899.90.1420.1410.167RANDOM9.85
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.160.77-0.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.275
r_dihedral_angle_4_deg11.328
r_dihedral_angle_3_deg10.84
r_dihedral_angle_1_deg6.08
r_scangle_it3.123
r_scbond_it2.311
r_mcangle_it1.522
r_angle_refined_deg1.348
r_mcbond_it1.096
r_angle_other_deg0.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.275
r_dihedral_angle_4_deg11.328
r_dihedral_angle_3_deg10.84
r_dihedral_angle_1_deg6.08
r_scangle_it3.123
r_scbond_it2.311
r_mcangle_it1.522
r_angle_refined_deg1.348
r_mcbond_it1.096
r_angle_other_deg0.95
r_symmetry_vdw_other0.278
r_nbd_refined0.209
r_symmetry_vdw_refined0.207
r_nbd_other0.185
r_nbtor_refined0.182
r_symmetry_hbond_refined0.158
r_xyhbond_nbd_refined0.137
r_chiral_restr0.09
r_nbtor_other0.085
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2631
Nucleic Acid Atoms
Solvent Atoms449
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling