2IV2

Reinterpretation of reduced form of formate dehydrogenase H from E. coli


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1SEE 1AA6
Crystal Properties
Matthews coefficientSolvent content
2.7756

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 146.4α = 90
b = 146.4β = 90
c = 81.27γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRON

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1AA62.2734.534111164588.50.1780.1750.226RANDOM22.57
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.5-1.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.633
r_dihedral_angle_4_deg20.186
r_dihedral_angle_3_deg17.25
r_dihedral_angle_1_deg7.364
r_scangle_it2.163
r_angle_refined_deg1.482
r_scbond_it1.47
r_mcangle_it0.971
r_angle_other_deg0.895
r_mcbond_it0.765
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.633
r_dihedral_angle_4_deg20.186
r_dihedral_angle_3_deg17.25
r_dihedral_angle_1_deg7.364
r_scangle_it2.163
r_angle_refined_deg1.482
r_scbond_it1.47
r_mcangle_it0.971
r_angle_other_deg0.895
r_mcbond_it0.765
r_symmetry_vdw_other0.237
r_symmetry_vdw_refined0.209
r_nbd_other0.202
r_nbd_refined0.191
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.165
r_symmetry_hbond_refined0.137
r_nbtor_other0.089
r_chiral_restr0.079
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5444
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms104

Software

Software
Software NamePurpose
REFMACrefinement