X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.72911.4M Ammonium sulfate, 20mM Cobalt chloride, 100mM 2-(N-Morpholino) ethanesulfonic acid, pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
4.6773.69

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.34α = 90
b = 114.34β = 90
c = 119.878γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-09-20MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X12B1.000NSLSX12B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.63099.90.09310.727.55744
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.63.731000.5328.9555

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1N5O3.630567850199.010.2510.2470.302RANDOM148.161
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.1-0.55-1.11.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.721
r_dihedral_angle_3_deg23.696
r_dihedral_angle_4_deg11.464
r_dihedral_angle_1_deg9.369
r_angle_refined_deg1.635
r_angle_other_deg0.955
r_nbd_refined0.283
r_symmetry_vdw_refined0.236
r_nbd_other0.218
r_nbtor_refined0.207
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.721
r_dihedral_angle_3_deg23.696
r_dihedral_angle_4_deg11.464
r_dihedral_angle_1_deg9.369
r_angle_refined_deg1.635
r_angle_other_deg0.955
r_nbd_refined0.283
r_symmetry_vdw_refined0.236
r_nbd_other0.218
r_nbtor_refined0.207
r_symmetry_vdw_other0.203
r_xyhbond_nbd_refined0.201
r_nbtor_other0.096
r_chiral_restr0.083
r_bond_refined_d0.014
r_xyhbond_nbd_other0.009
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1671
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms11

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling