X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.829126% peg-4000, 0.2M sodium acetate, 0.1M Tris, pH 7.8, vapor diffusion, hanging drop, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.242.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.549α = 90
b = 37.558β = 102.7
c = 88.478γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2006-09-16MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X250.96860, 0.97910, 0.97950NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75099.30.17.53.632012
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.71.7693.60.3752.6

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMAD1.7012031985161599.1970.1660.16390.20327.666
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0010.0060.002
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.771
r_dihedral_angle_4_deg14.343
r_dihedral_angle_3_deg11.7
r_dihedral_angle_1_deg6.222
r_scangle_it4.139
r_mcangle_it3.081
r_scbond_it2.929
r_mcbond_it2.132
r_angle_other_deg1.934
r_angle_refined_deg1.496
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.771
r_dihedral_angle_4_deg14.343
r_dihedral_angle_3_deg11.7
r_dihedral_angle_1_deg6.222
r_scangle_it4.139
r_mcangle_it3.081
r_scbond_it2.929
r_mcbond_it2.132
r_angle_other_deg1.934
r_angle_refined_deg1.496
r_mcbond_other0.716
r_symmetry_vdw_other0.22
r_nbd_refined0.212
r_nbd_other0.201
r_symmetry_vdw_refined0.181
r_nbtor_refined0.18
r_xyhbond_nbd_refined0.12
r_symmetry_hbond_refined0.107
r_chiral_restr0.099
r_nbtor_other0.08
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2427
Nucleic Acid Atoms
Solvent Atoms226
Heterogen Atoms12

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
SHELXmodel building
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXDphasing
ARP/wARPmodel building
MolProbitymodel building