X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52910.1 M cacodylate, pH 6.5, 22-30% PEG 8K, 0.2 M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.2545.42

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.929α = 90
b = 44.703β = 90
c = 68.036γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray98CCDADSC QUANTUM 3152006-06-02MSINGLE WAVELENGTH
21x-rayCCDADSC QUANTUM 2102006-05-18MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.20.97973, 0.97986, 0.95370ALS8.2.2
2SYNCHROTRONALS BEAMLINE 8.2.10.9199ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.8501000.0750.07526.77121292218.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.861000.330.334.256.91208

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.837.3722120901149559599.990.2010.200830.199290.23123RANDOM16.801
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.27-0.260.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.51
r_dihedral_angle_4_deg23.746
r_dihedral_angle_3_deg16.563
r_dihedral_angle_1_deg5.635
r_scangle_it4.089
r_scbond_it2.581
r_mcangle_it1.603
r_angle_refined_deg1.43
r_mcbond_it0.958
r_nbtor_refined0.317
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.51
r_dihedral_angle_4_deg23.746
r_dihedral_angle_3_deg16.563
r_dihedral_angle_1_deg5.635
r_scangle_it4.089
r_scbond_it2.581
r_mcangle_it1.603
r_angle_refined_deg1.43
r_mcbond_it0.958
r_nbtor_refined0.317
r_nbd_refined0.233
r_symmetry_vdw_refined0.21
r_xyhbond_nbd_refined0.144
r_symmetry_hbond_refined0.142
r_chiral_restr0.109
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms935
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing