2IC7

Crystal Structure of Maltose Transacetylase from Geobacillus kaustophilus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
172931 MICROLITER DROPS CONTAINING EQUAL VOLUMES OF PROTEIN CONCENTRATE (10 MG/ML) AND RESERVOIR SOLUTION CONTAINING 3.5M Sodium Formate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.7455.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.479α = 90
b = 104.478β = 101.85
c = 65.579γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDROSENBAUM2006-08-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-IDAPS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.785098.20.05642.956.7611372
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.781.8487.50.179.275.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OCX1.7840.52580375803731001000.1790.1780.206RANDOM21.13
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.951.45-1.260.91
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.193
r_dihedral_angle_1_deg15.834
r_dihedral_angle_4_deg13.746
r_dihedral_angle_3_deg12.207
r_scangle_it3.849
r_scbond_it2.384
r_angle_refined_deg1.467
r_mcangle_it1.374
r_mcbond_it0.895
r_nbtor_refined0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.193
r_dihedral_angle_1_deg15.834
r_dihedral_angle_4_deg13.746
r_dihedral_angle_3_deg12.207
r_scangle_it3.849
r_scbond_it2.384
r_angle_refined_deg1.467
r_mcangle_it1.374
r_mcbond_it0.895
r_nbtor_refined0.307
r_symmetry_hbond_refined0.201
r_nbd_refined0.199
r_symmetry_vdw_refined0.179
r_xyhbond_nbd_refined0.177
r_chiral_restr0.115
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4341
Nucleic Acid Atoms
Solvent Atoms595
Heterogen Atoms

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
CCP4phasing