X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP293PEG 3350, Tri-sodium citrate dihydrate, MnCl2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5251.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 116.87α = 90
b = 116.87β = 90
c = 215.076γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm platemirrors2006-06-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4C0.97860NSLSX4C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8201000.0940.09418.44.980763
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.91000.5330.53334.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2AJT2.82037213198892.310.23180.228780.28811RANDOM44.798
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.312.665.31-7.97
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.57
r_dihedral_angle_3_deg18.86
r_dihedral_angle_4_deg18.831
r_dihedral_angle_1_deg7.09
r_angle_refined_deg1.216
r_scangle_it1.136
r_angle_other_deg0.783
r_scbond_it0.72
r_mcangle_it0.541
r_mcbond_it0.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.57
r_dihedral_angle_3_deg18.86
r_dihedral_angle_4_deg18.831
r_dihedral_angle_1_deg7.09
r_angle_refined_deg1.216
r_scangle_it1.136
r_angle_other_deg0.783
r_scbond_it0.72
r_mcangle_it0.541
r_mcbond_it0.358
r_symmetry_vdw_other0.227
r_nbd_refined0.226
r_nbd_other0.192
r_nbtor_refined0.182
r_xyhbond_nbd_refined0.172
r_symmetry_hbond_refined0.145
r_symmetry_vdw_refined0.131
r_nbtor_other0.087
r_xyhbond_nbd_other0.083
r_chiral_restr0.066
r_mcbond_other0.052
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11459
Nucleic Acid Atoms
Solvent Atoms103
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing