2HVL

Crystal structure of the HePTP catalytic domain C270S mutant


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.7277Sodium/Potassium phosphate, acetate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
3.9668.93

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.106α = 90
b = 127.106β = 90
c = 59.999γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42006-04-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X4A0.97929NSLSX4A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.45099.1216492163211
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.4998.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.4202068020499110599.120.2120.189240.187210.22769RANDOM35.285
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.1-0.20.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.718
r_dihedral_angle_4_deg13.946
r_dihedral_angle_3_deg13.198
r_dihedral_angle_1_deg6.365
r_scangle_it4.258
r_scbond_it2.936
r_mcangle_it2.013
r_mcbond_it1.584
r_angle_refined_deg1.31
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.718
r_dihedral_angle_4_deg13.946
r_dihedral_angle_3_deg13.198
r_dihedral_angle_1_deg6.365
r_scangle_it4.258
r_scbond_it2.936
r_mcangle_it2.013
r_mcbond_it1.584
r_angle_refined_deg1.31
r_nbtor_refined0.3
r_nbd_refined0.187
r_symmetry_vdw_refined0.155
r_xyhbond_nbd_refined0.108
r_chiral_restr0.088
r_symmetry_hbond_refined0.087
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2247
Nucleic Acid Atoms
Solvent Atoms216
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
REFMACphasing