2HC1

Engineered catalytic domain of protein tyrosine phosphatase HPTPbeta.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.229820% PEG 8000, 220 mM MgCl2, 1% BME, 0.1% BOG, 5mM DTT, 180 mM Nh4OAc, pH 8.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.4249.18

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.06α = 90
b = 70.714β = 90
c = 118.455γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDMARRESEARCH2005-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.333.8872.60.0415.321.25989659896
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.31.469.20.352.850.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2H021.333.885989556897299872.630.1360.133760.17885RANDOM11.488
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.32-0.40.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.657
r_dihedral_angle_4_deg15.791
r_sphericity_free14.431
r_dihedral_angle_3_deg14.05
r_dihedral_angle_1_deg8.876
r_scangle_it5.809
r_sphericity_bonded5.574
r_scbond_it4.727
r_mcangle_it3.291
r_mcbond_it2.837
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.657
r_dihedral_angle_4_deg15.791
r_sphericity_free14.431
r_dihedral_angle_3_deg14.05
r_dihedral_angle_1_deg8.876
r_scangle_it5.809
r_sphericity_bonded5.574
r_scbond_it4.727
r_mcangle_it3.291
r_mcbond_it2.837
r_rigid_bond_restr2.461
r_angle_refined_deg1.232
r_mcbond_other1.224
r_angle_other_deg0.7
r_xyhbond_nbd_refined0.324
r_symmetry_vdw_other0.316
r_symmetry_vdw_refined0.272
r_nbd_refined0.25
r_nbd_other0.24
r_nbtor_refined0.187
r_symmetry_hbond_refined0.131
r_nbtor_other0.09
r_chiral_restr0.088
r_xyhbond_nbd_other0.068
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2629
Nucleic Acid Atoms
Solvent Atoms362
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
HKL-2000data scaling
AMoREphasing