X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.4293PEG 8000, CALCIUM ACETATE, SODIUM CACODYLATE, SODIUM AZIDE, PH 6.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K, pH 6.40
Crystal Properties
Matthews coefficientSolvent content
2.754

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.108α = 90
b = 67.184β = 94.79
c = 112.313γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEELLIOTT GX-211.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7633.5997.10.1345.33.2190891908941
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.762.9188.80.37422.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1A8A2.7633.591817918179981970.2010.2010.1970.261RANDOM33.56
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-10.341.040.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.355
r_dihedral_angle_3_deg18.859
r_dihedral_angle_4_deg16.181
r_dihedral_angle_1_deg4.958
r_mcangle_it2.1
r_scbond_it1.518
r_angle_refined_deg1.229
r_mcbond_it1.209
r_scangle_it1.17
r_nbtor_refined0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.355
r_dihedral_angle_3_deg18.859
r_dihedral_angle_4_deg16.181
r_dihedral_angle_1_deg4.958
r_mcangle_it2.1
r_scbond_it1.518
r_angle_refined_deg1.229
r_mcbond_it1.209
r_scangle_it1.17
r_nbtor_refined0.3
r_symmetry_vdw_refined0.242
r_nbd_refined0.209
r_symmetry_hbond_refined0.207
r_xyhbond_nbd_refined0.14
r_metal_ion_refined0.114
r_chiral_restr0.081
r_symmetry_metal_ion_refined0.075
r_bond_refined_d0.009
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4996
Nucleic Acid Atoms
Solvent Atoms147
Heterogen Atoms22

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement