Experiment: 2GOY

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	6.5	298	1.5M ammonium sulfate, 0.1M sodium cacodylate, 2.5mM APS, pH 6.5, VAPOR DIFFUSION, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
3.35	63.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.027	α = 90.1
b = 102.788	β = 102.57
c = 139.374	γ = 89.95

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	123	IMAGE PLATE	MAR scanner 345 mm plate		2005-03-05	M	SINGLE WAVELENGTH
2	1	x-ray	123	CCD	ADSC QUANTUM 315		2005-03-06	M	SINGLE WAVELENGTH
3	1	x-ray	123	CCD	MARMOSAIC 325 mm CCD		2005-04-01	M	MAD
4	1

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-1	0.98397	SSRL	BL9-1
2	SYNCHROTRON	SSRL BEAMLINE BL9-2	1.73108	SSRL	BL9-2
3	SYNCHROTRON	SSRL BEAMLINE BL9-2	1.73710, 1.74203, 1.73710	SSRL	BL9-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1,2,3	2.7	38.674	95.6	0.105	0.105	5.9	2	85404	85404

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.7	2.77		95.7	0.337	0.337	1.9	2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.7	38.68	85402	85402	4181	95.5	0.232	0.232	0.23	0.265	RANDOM	38.4

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-15.08		6.92	2.38	-6.36	12.69

RMS Deviations
Key	Refinement Restraint Deviation
c_dihedral_angle_d	22.1
c_scangle_it	4.01
c_improper_angle_d	3.18
c_mcangle_it	3.11
c_scbond_it	2.73
c_mcbond_it	1.9
c_angle_deg	1.5
c_bond_d	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	14404
Nucleic Acid Atoms
Solvent Atoms	151
Heterogen Atoms	172

Software

Software
Software Name	Purpose
SCALA	data scaling
CNS	phasing
CNS	refinement
PDB_EXTRACT	data extraction
Blu-Ice	data collection
CCP4	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.