2FSN

Crystal structure of Ta0583, an archaeal actin homolog, complex with ADP


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293100mM Bis-Tris pH 6.5, 15-17% PEG-2000MME, 14-16% ethylene glycol, 10mM ADP, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3647.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.703α = 90
b = 92.84β = 89.94
c = 73.659γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-05-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.9788SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.973.65999.80.0450.045113.815505
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.061000.4140.4141.43.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.9201544977199.840.2870.2830.359RANDOM38.473
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.260.3-0.745
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.662
r_scangle_it3.147
r_angle_refined_deg1.869
r_scbond_it1.86
r_mcangle_it1.453
r_angle_other_deg0.97
r_mcbond_it0.791
r_symmetry_vdw_refined0.273
r_nbd_refined0.262
r_nbd_other0.239
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg8.662
r_scangle_it3.147
r_angle_refined_deg1.869
r_scbond_it1.86
r_mcangle_it1.453
r_angle_other_deg0.97
r_mcbond_it0.791
r_symmetry_vdw_refined0.273
r_nbd_refined0.262
r_nbd_other0.239
r_xyhbond_nbd_refined0.191
r_symmetry_vdw_other0.174
r_symmetry_hbond_refined0.096
r_nbtor_other0.091
r_chiral_restr0.088
r_metal_ion_refined0.045
r_bond_refined_d0.018
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4243
Nucleic Acid Atoms
Solvent Atoms9
Heterogen Atoms56

Software

Software
Software NamePurpose
SCALAdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling