2E4I

Human Telomeric DNA mixed-parallel/antiparallel quadruplex under Physiological Ionic Conditions Stabilized by Proper Incorporation of 8-Bromoguanosines


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY0.6mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS100% D2O110mM Potassium Ion6.3ambient298
22D TOCSY0.6mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS100% D2O110mM Potassium Ion6.3ambient298
3DQF-COSY0.6mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS100% D2O110mM Potassium Ion6.3ambient298
42D NOESY0.6mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS, 95% H2O, 5% D2O95% H2O/5% D2O110mM Potassium Ion6.3ambient298
5JR-HMBC1.3mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS, 95% H2O, 5% D2O95% H2O/5% D2O110mM Potassium Ion6.3ambient298
613C-HSQC1.3mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS, 95% H2O, 5% D2O95% H2O/5% D2O110mM Potassium Ion6.3ambient298
7H, P HSQC0.6mM DNA; 100mM KCl; 10mM K-phosphate (pH 6.3); 0.01mM DSS100% D2O110mM Potassium Ion6.3ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structures are based on a total of 752 restraints, 582 are NOE-derived distance constraints, 110 dihedral angle restraints,48 distance restraints from hydrogen bonds, 12 planarity restraints for tetrad planes.NMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number1
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.4F. Delaglio
2processingXwinNMR3.5Bruker
3data analysisPIPP4.3.2D. Garrett
4data analysisSpaky3.112T.D. Goddard
5structure solutionX-PLOR3.851A.T. Brunger
6refinementX-PLOR3.851A.T. Brunger