2BK4

Human Monoamine Oxidase B: I199F mutant in complex with rasagiline


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.2pH 6.20
Crystal Properties
Matthews coefficientSolvent content
2.7250

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 132.026α = 90
b = 223.524β = 90
c = 86.714γ = 90
Symmetry
Space GroupC 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8SPring-8

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.920980.0812.73.887975
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.92980.353.63.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OJ91.91595349244097.10.1920.1910.218RANDOM16.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.10.08-0.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.412
r_dihedral_angle_4_deg18.182
r_dihedral_angle_3_deg14.597
r_dihedral_angle_1_deg5.464
r_scangle_it2.479
r_scbond_it1.529
r_angle_refined_deg1.183
r_mcangle_it0.934
r_mcbond_it0.616
r_symmetry_hbond_refined0.389
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.412
r_dihedral_angle_4_deg18.182
r_dihedral_angle_3_deg14.597
r_dihedral_angle_1_deg5.464
r_scangle_it2.479
r_scbond_it1.529
r_angle_refined_deg1.183
r_mcangle_it0.934
r_mcbond_it0.616
r_symmetry_hbond_refined0.389
r_nbtor_refined0.301
r_symmetry_vdw_refined0.262
r_nbd_refined0.193
r_xyhbond_nbd_refined0.103
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7917
Nucleic Acid Atoms
Solvent Atoms545
Heterogen Atoms132

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling