2B5X
Solution Structure of a Thioredoxin-like Protein in the Reduced Form
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 1mM Trxy U-15N, 13C; 50mM sodium phosphate, 100mM sodium chloride; 90% H2O 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 7.4 | ambient | 298.4 | |
| 2 | 3D_15N-separated_NOESY | 1mM Trxy U-15N, 13C; 50mM sodium phosphate, 100mM sodium chloride; 90% H2O 10% D2O | 90% H2O/10% D2O | 50mM sodium phosphate, 100mM sodium chloride | 7.4 | ambient | 298.4 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 800 |
| 2 | Bruker | AVANCE | 500 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing molecular dynamics | NMRPipe | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 11 |
| Representative Model | 1 (minimized average structure) |
| Additional NMR Experimental Information | |
|---|---|
| Details | ensembled structures plus mean structure |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | NMRPipe | 2.1 | F.Delaglio, S.Grzesiek, G.Vuister, G.Zhu, J.Pfeifer, A.Bax |
| 2 | data analysis | SANE | B.M.Duggan, G.B.Legge, H.J.Dyson, P.E.Wright | |
| 3 | structure solution | CYANA | 1.0.6 | P.Guntert, C.Mumenthaler, K.Wuthrich |
| 4 | refinement | Amber | 7.0 | D.Case |
| 5 | data analysis | NMRView | 5 | B.Johnson |
| 6 | collection | XwinNMR | 3.5 | Bruker |
