2AF5

2.5A X-ray Structure of Engineered OspA protein


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.957

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 48.547α = 90
b = 55.33β = 104.08
c = 70.361γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHmirrors2004-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-ID-B0.97946APS14-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.43099.90.0759.25.4113671427161.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OSP2.5201136711367128799.890.245720.245720.242370.27556RANDOM20.892
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
7.94-2.61-6-3.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.03
r_dihedral_angle_4_deg19.65
r_dihedral_angle_3_deg18.176
r_dihedral_angle_1_deg7.229
r_scangle_it4.718
r_scbond_it3.291
r_mcangle_it1.945
r_mcbond_it1.562
r_angle_refined_deg1.481
r_angle_other_deg0.952
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.03
r_dihedral_angle_4_deg19.65
r_dihedral_angle_3_deg18.176
r_dihedral_angle_1_deg7.229
r_scangle_it4.718
r_scbond_it3.291
r_mcangle_it1.945
r_mcbond_it1.562
r_angle_refined_deg1.481
r_angle_other_deg0.952
r_mcbond_other0.329
r_symmetry_vdw_refined0.251
r_symmetry_vdw_other0.234
r_nbd_refined0.227
r_nbd_other0.197
r_xyhbond_nbd_refined0.171
r_symmetry_hbond_refined0.143
r_nbtor_other0.085
r_chiral_restr0.077
r_bond_refined_d0.013
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2223
Nucleic Acid Atoms
Solvent Atoms52
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
MOLREPphasing