2A9N

A Mutation Designed to Alter Crystal Packing Permits Structural Analysis of a Tight-binding Fluorescein-scFv complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.129829-30% (w/v) PEG 8000, 0.2 M ammonium sulfate, 10 mM sodium acetate , pH 4.1, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.346

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.382α = 90
b = 100.46β = 90
c = 61.749γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298IMAGE PLATEMARRESEARCHosmics mirror2001-10-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
131897.51030610306
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
33.1396.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry: 2A9M3189264926490596.40.220940.220940.216510.26607RANDOM33.491
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.66-1.41-3.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.088
r_angle_refined_deg1.26
r_scangle_it1.047
r_angle_other_deg0.813
r_scbond_it0.64
r_mcangle_it0.424
r_nbd_other0.228
r_mcbond_it0.225
r_nbd_refined0.201
r_symmetry_vdw_refined0.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.088
r_angle_refined_deg1.26
r_scangle_it1.047
r_angle_other_deg0.813
r_scbond_it0.64
r_mcangle_it0.424
r_nbd_other0.228
r_mcbond_it0.225
r_nbd_refined0.201
r_symmetry_vdw_refined0.184
r_xyhbond_nbd_refined0.176
r_symmetry_hbond_refined0.154
r_symmetry_vdw_other0.139
r_nbtor_other0.083
r_chiral_restr0.075
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3530
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
CCP4data scaling
AMoREphasing