2A1J

Crystal Structure of the Complex between the C-Terminal Domains of Human XPF and ERCC1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.5295Sodium Citrate, Ammonium Sulfate, Sodium Chloride, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
4.270

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.848α = 90
b = 69.848β = 90
c = 104.109γ = 120
Symmetry
Space GroupP 32 1 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray116CCDADSC QUANTUM 3152004-11-20MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID1.00696, 1.00930APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.75099.98450844222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.899.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.734.7127820781237299.950.250.240730.239060.27483RANDOM54.887
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.740.871.74-2.61
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.365
r_scangle_it5.379
r_scbond_it3.115
r_angle_refined_deg2.123
r_mcangle_it1.971
r_mcbond_it0.955
r_symmetry_vdw_refined0.292
r_nbd_refined0.283
r_xyhbond_nbd_refined0.174
r_chiral_restr0.132
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg9.365
r_scangle_it5.379
r_scbond_it3.115
r_angle_refined_deg2.123
r_mcangle_it1.971
r_mcbond_it0.955
r_symmetry_vdw_refined0.292
r_nbd_refined0.283
r_xyhbond_nbd_refined0.174
r_chiral_restr0.132
r_symmetry_hbond_refined0.056
r_bond_refined_d0.022
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1093
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing