X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.8295PEG3350, MPD, pH 4.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
237

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.52α = 90
b = 34.03β = 109.58
c = 73.85γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-05-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.813EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9120990.04419.93.61223012230-3-330
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.91297.50.3323.83.41542

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1wrz1.9115-3122221222261199.290.19410.19410.191310.24829RANDOM38.722
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.23-0.15-0.32-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.842
r_dihedral_angle_3_deg16.703
r_dihedral_angle_4_deg14.468
r_dihedral_angle_1_deg5.259
r_scangle_it3.265
r_scbond_it2.266
r_mcangle_it1.754
r_mcbond_it1.303
r_angle_refined_deg1.115
r_angle_other_deg0.798
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.842
r_dihedral_angle_3_deg16.703
r_dihedral_angle_4_deg14.468
r_dihedral_angle_1_deg5.259
r_scangle_it3.265
r_scbond_it2.266
r_mcangle_it1.754
r_mcbond_it1.303
r_angle_refined_deg1.115
r_angle_other_deg0.798
r_nbd_refined0.231
r_mcbond_other0.23
r_symmetry_vdw_other0.214
r_nbtor_refined0.172
r_nbd_other0.17
r_xyhbond_nbd_refined0.152
r_symmetry_vdw_refined0.136
r_metal_ion_refined0.127
r_symmetry_hbond_refined0.101
r_nbtor_other0.085
r_chiral_restr0.07
r_bond_refined_d0.01
r_bond_other_d0.005
r_gen_planes_refined0.003
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1312
Nucleic Acid Atoms
Solvent Atoms121
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
MOLREPphasing