1ZUN

Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.5295PEG 4000, tris hydrochloric acid, sodium acetate, guanosine diphosphate, 5'-adenyly-diphosphate-monothiophosphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.3447.45

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 110.072α = 90
b = 110.072β = 90
c = 171.002γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 210MIRRORS2004-08-29MMAD
21x-rayMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.9184, 0.9793ALS8.2.1
2SYNCHROTRONALS BEAMLINE 8.2.10.9794ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.7500.1540.0660.06616.075.8211602255.835
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.898.50.3460.3462.845.24101

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (I)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT2.720222002010911000.224390.221620.27617RANDOM42.103
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.290.641.29-1.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.056
r_dihedral_angle_3_deg17.281
r_dihedral_angle_4_deg15.336
r_dihedral_angle_1_deg5.285
r_angle_refined_deg1.059
r_scangle_it0.981
r_scbond_it0.579
r_mcangle_it0.463
r_nbtor_refined0.3
r_mcbond_it0.245
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.056
r_dihedral_angle_3_deg17.281
r_dihedral_angle_4_deg15.336
r_dihedral_angle_1_deg5.285
r_angle_refined_deg1.059
r_scangle_it0.981
r_scbond_it0.579
r_mcangle_it0.463
r_nbtor_refined0.3
r_mcbond_it0.245
r_nbd_refined0.194
r_symmetry_vdw_refined0.177
r_metal_ion_refined0.158
r_xyhbond_nbd_refined0.146
r_symmetry_hbond_refined0.128
r_chiral_restr0.071
r_bond_refined_d0.005
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4688
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms61

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing