X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Batch7296PEG 4K, Hepes, pH 7.0, Batch, temperature 296K
Crystal Properties
Matthews coefficientSolvent content
2.1646

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.302α = 90
b = 84.986β = 90
c = 121.779γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDAPS-12004-07-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97934APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.89869.00796.33220.08415.0966.54371443714-1-1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.91.9796.10.5214.0275.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1OUU1.969.014371443714232796.330.245730.242980.29717RANDOM33.047
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.54-1.580.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.365
r_dihedral_angle_3_deg18.947
r_dihedral_angle_4_deg16.963
r_dihedral_angle_1_deg6.887
r_scangle_it6.581
r_scbond_it5.027
r_mcangle_it3.036
r_angle_refined_deg1.809
r_mcbond_it1.78
r_angle_other_deg0.807
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.365
r_dihedral_angle_3_deg18.947
r_dihedral_angle_4_deg16.963
r_dihedral_angle_1_deg6.887
r_scangle_it6.581
r_scbond_it5.027
r_mcangle_it3.036
r_angle_refined_deg1.809
r_mcbond_it1.78
r_angle_other_deg0.807
r_nbtor_other0.341
r_nbtor_refined0.316
r_nbd_other0.311
r_symmetry_vdw_refined0.26
r_nbd_refined0.244
r_xyhbond_nbd_refined0.175
r_symmetry_hbond_refined0.169
r_chiral_restr0.138
r_mcbond_other0.08
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4476
Nucleic Acid Atoms
Solvent Atoms219
Heterogen Atoms172

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing