X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.8294Ammonium sulfate, Sodium citrate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
1.935.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.555α = 90
b = 38.395β = 90
c = 63.72γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDSBC-2Mirrors2004-04-15MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.96498, 0.97872, 0.98024APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.785097.10.05325.85.925374
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.781.8685.40.3783.14.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.7863.7623288125696.710.167150.16410.22297RANDOM53.148
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.591.06-1.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.94
r_dihedral_angle_4_deg15.43
r_dihedral_angle_3_deg13.652
r_sphericity_free8.687
r_dihedral_angle_1_deg6.324
r_scangle_it4.728
r_scbond_it3.317
r_sphericity_bonded2.778
r_mcangle_it2.174
r_rigid_bond_restr1.771
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.94
r_dihedral_angle_4_deg15.43
r_dihedral_angle_3_deg13.652
r_sphericity_free8.687
r_dihedral_angle_1_deg6.324
r_scangle_it4.728
r_scbond_it3.317
r_sphericity_bonded2.778
r_mcangle_it2.174
r_rigid_bond_restr1.771
r_mcbond_it1.765
r_angle_refined_deg1.661
r_angle_other_deg0.832
r_mcbond_other0.551
r_symmetry_vdw_other0.234
r_nbd_refined0.214
r_symmetry_vdw_refined0.205
r_nbd_other0.193
r_nbtor_refined0.173
r_xyhbond_nbd_refined0.153
r_symmetry_hbond_refined0.123
r_chiral_restr0.098
r_nbtor_other0.086
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2392
Nucleic Acid Atoms
Solvent Atoms196
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
CCP4data scaling
SHELXSphasing