1WUA

The structure of Aplyronine A-actin complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG8000 20%(w/v) 0.1M sodium cacodylate , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.448

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.704α = 90
b = 75.123β = 95.23
c = 67.546γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS V2004-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.0SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4535.5310069927

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1eqy1.4535.536639535321000.152660.152660.151350.17579RANDOM15.878
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.03-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.319
r_dihedral_angle_4_deg15.642
r_dihedral_angle_3_deg12.547
r_dihedral_angle_1_deg5.289
r_scangle_it3.046
r_scbond_it2.059
r_angle_refined_deg1.4
r_mcangle_it1.271
r_mcbond_it0.831
r_angle_other_deg0.814
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.319
r_dihedral_angle_4_deg15.642
r_dihedral_angle_3_deg12.547
r_dihedral_angle_1_deg5.289
r_scangle_it3.046
r_scbond_it2.059
r_angle_refined_deg1.4
r_mcangle_it1.271
r_mcbond_it0.831
r_angle_other_deg0.814
r_metal_ion_refined0.337
r_nbd_refined0.213
r_symmetry_vdw_other0.204
r_mcbond_other0.18
r_nbtor_refined0.177
r_nbd_other0.176
r_symmetry_vdw_refined0.17
r_symmetry_hbond_refined0.147
r_xyhbond_nbd_refined0.108
r_nbtor_other0.083
r_chiral_restr0.08
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_gen_planes_other0.002
r_bond_other_d0.001
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5851
Nucleic Acid Atoms
Solvent Atoms1983
Heterogen Atoms240

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing