1WL4

Human cytosolic acetoacetyl-CoA thiolase complexed with CoA


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5295ammonium sulfate, lithium sulfate, pH 5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties
Matthews coefficientSolvent content
2.9958.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.86α = 90
b = 109.83β = 90
c = 155.69γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X11EMBL/DESY, HamburgX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5530960.05217.25.26937269372-3-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.673.40.3563.83.34749

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.5510-36910369103218796.910.10730.10730.106130.13985RANDOM14.767
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5-0.870.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.419
r_dihedral_angle_3_deg13.745
r_dihedral_angle_4_deg10.045
r_dihedral_angle_1_deg8.6
r_sphericity_free8.507
r_scangle_it5.954
r_scbond_it4.728
r_sphericity_bonded3.709
r_mcangle_it3.685
r_mcbond_it3.417
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.419
r_dihedral_angle_3_deg13.745
r_dihedral_angle_4_deg10.045
r_dihedral_angle_1_deg8.6
r_sphericity_free8.507
r_scangle_it5.954
r_scbond_it4.728
r_sphericity_bonded3.709
r_mcangle_it3.685
r_mcbond_it3.417
r_rigid_bond_restr2.44
r_angle_refined_deg1.819
r_mcbond_other1.632
r_angle_other_deg0.998
r_symmetry_vdw_other0.299
r_symmetry_vdw_refined0.288
r_nbd_refined0.234
r_symmetry_hbond_refined0.226
r_xyhbond_nbd_refined0.215
r_nbd_other0.194
r_chiral_restr0.12
r_nbtor_other0.089
r_bond_refined_d0.019
r_gen_planes_refined0.011
r_gen_planes_other0.009
r_bond_other_d0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2872
Nucleic Acid Atoms
Solvent Atoms585
Heterogen Atoms81

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
AMoREphasing