1UUY

Structure of a molybdopterin-bound cnx1g domain links molybdenum and copper metabolism


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.83.2 M SODIUM FORMATE ANAEROBIC, pH 7.80
Crystal Properties
Matthews coefficientSolvent content
2.750.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 171.09α = 90
b = 171.09β = 90
c = 171.09γ = 90
Symmetry
Space GroupF 41 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-07-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW6MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4527.0299.30.0556.26786.88367392
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.451.5399.90.41.786.67

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1UUX1.452736120191698.90.1630.1620.179RANDOM12.39
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.198
r_dihedral_angle_1_deg4.85
r_scbond_it3.299
r_mcangle_it2.779
r_mcbond_it1.6
r_angle_refined_deg1.45
r_angle_other_deg1.086
r_symmetry_hbond_refined0.326
r_symmetry_vdw_refined0.296
r_nbd_other0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.198
r_dihedral_angle_1_deg4.85
r_scbond_it3.299
r_mcangle_it2.779
r_mcbond_it1.6
r_angle_refined_deg1.45
r_angle_other_deg1.086
r_symmetry_hbond_refined0.326
r_symmetry_vdw_refined0.296
r_nbd_other0.24
r_symmetry_vdw_other0.23
r_xyhbond_nbd_refined0.221
r_nbd_refined0.215
r_chiral_restr0.184
r_nbtor_other0.083
r_bond_refined_d0.012
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1186
Nucleic Acid Atoms
Solvent Atoms168
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing