1TV8

Structure of MoaA in complex with S-adenosylmethionine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5298Na formate, HEPES, DMSO, DTT, S-adenosylemthionine, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.957.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.982α = 90
b = 103.305β = 90
c = 189.925γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X26C1.100NSLSX26C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25047193
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2484.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.295.354470044700239996.70.214230.212750.24113RANDOM40.807
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.172.15-1.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.932
r_scangle_it4.129
r_scbond_it2.463
r_angle_refined_deg1.694
r_mcangle_it1.512
r_angle_other_deg0.93
r_mcbond_it0.801
r_symmetry_vdw_other0.256
r_nbd_other0.242
r_nbd_refined0.217
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg7.932
r_scangle_it4.129
r_scbond_it2.463
r_angle_refined_deg1.694
r_mcangle_it1.512
r_angle_other_deg0.93
r_mcbond_it0.801
r_symmetry_vdw_other0.256
r_nbd_other0.242
r_nbd_refined0.217
r_xyhbond_nbd_refined0.188
r_symmetry_vdw_refined0.155
r_chiral_restr0.107
r_nbtor_other0.089
r_symmetry_hbond_refined0.081
r_bond_refined_d0.019
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5273
Nucleic Acid Atoms
Solvent Atoms128
Heterogen Atoms104

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
FFTmodel building
REFMACrefinement
FFTphasing